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Getting Started

  • Introduction
  • Projects
    • MultiTask Learning (MTL)
      • Stanford Knee MRI Multi-Task Evaluation (SKM-TEA) 2021 Dataset
    • quantitative MR Imaging (qMRI)
      • AHEAD
    • MRI Reconstruction (REC)
      • CC359
      • fastMRI Brains Multicoil
      • fastMRI Knees Multicoil
      • fastMRI Knees Singlecoil
      • Stanford Knee MRI Multi-Task Evaluation (SKM-TEA) 2021 Dataset
      • Stanford Fullysampled 3D FSE Knees 2019 Dataset
    • MRI Segmentation (SEG)
      • BraTS 2023 Adult Glioma
      • ISLES 2022 Sub Acute Stroke
      • Stanford Knee MRI Multi-Task Evaluation (SKM-TEA) 2021 Dataset
  • Tutorials

ATOMMIC MRI

  • Collections & Models
  • Losses
  • Metrics
  • Pre-processing
  • Undersampling

ATOMMIC Core

  • Training & Testing
  • Experiment Manager
  • Exporting ATOMMIC Models

API

  • Core
  • Common MRI collection
    • Callbacks
    • Common MRI Data Classes
    • Common MRI Losses
    • Common MRI Metrics
    • Common MRI Neural Networks
    • Common MRI Parts
      • Coil Sensitivity Maps
      • FFT
      • Common MRI Transforms
      • Common MRI Utils
  • MRI Multitask Learning (MTL)
    • Multitask MRI Reconstruction & Segmentation
      • Multitask MRI Reconstruction & Segmentation Data Classes
      • Multitask MRI Reconstruction & Segmentation Neural Networks
      • Multitask MRI Reconstruction & Segmentation Parts
  • MRI Reconstruction (REC)
    • MRI Reconstruction Data Classes
    • MRI Reconstruction Losses
    • MRI Reconstruction Metrics
    • MRI Reconstruction Neural Networks
    • MRI Reconstruction Parts
  • MRI Segmentation (SEG)
    • MRI Segmentation Data Classes
    • MRI Segmentation Losses
    • MRI Segmentation Metrics
    • MRI Segmentation Neural Networks
    • MRI Segmentation Parts
  • Quantitative MRI (qMRI)
    • Quantitative MRI Data Classes
    • Quantitative MRI Neural Networks
    • Quantitative MRI Parts
  • .rst

MRI Reconstruction (REC)

MRI Reconstruction (REC)#

  • MRI Reconstruction Data Classes
    • ReconstructionMRIDataset
    • CC359ReconstructionMRIDataset
      • CC359ReconstructionMRIDataset.get_consecutive_slices()
    • SKMTEAReconstructionMRIDataset
    • StanfordKneesReconstructionMRIDataset
  • MRI Reconstruction Losses
    • NoiseAwareLoss
      • NoiseAwareLoss.forward()
    • SSIMLoss
      • SSIMLoss.__init__()
      • SSIMLoss.forward()
  • MRI Reconstruction Metrics
  • MRI Reconstruction Neural Networks
  • MRI Reconstruction Parts

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Multitask MRI Reconstruction & Segmentation Parts

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MRI Reconstruction Data Classes

By Dimitris Karkalousos

Last updated on May 02, 2024.